Skyline Targeted Proteomics Environment 
Register now to reserve your seat at the Skyline User Group Meeting at ASMS
  St. Louis, MO - Sunday, May 31st

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More Videos

New! Review the Skyline Tutorial Webinar series

New! Grouped Study Data Processing

New! Small Molecule Targets

New! Data Independent Acquisition

New! MS1 Full-Scan Filtering (revised for v2.5)

New! Targeted MS/MS (PRM) (revised for v2.5)

New! Creating Chromatogram Libraries with Panorama

More Tutorials

Join Us

Spring Computation and Statistics for Discovery and Targeted Proteomics at Northeastern, Boston (May 18-22, 2015)

Summer Skyline User Group Meeting at ASMS 2015, St. Louis, MO (May 31, 2015)

Summer Targeted Proteomics Course at ETH, Zurich (June 22-26, 2015)


Spring Targeted Quantitative Proteomics Course at UW, Seattle (March 23-27, 2015)

Spring Short Course at US HUPO, Tempe (March 15, 2015) - review the slides

Winter Targeted Proteomics Workshop at IIT Bombay (Dec 10-11, 2014)

Winter Targeted Proteomics Workshop at Kyoto University (Nov 26, 2014)

Fall Proteomics Informatics Short Course in Seoul (October 13 & 14, 2014)

Fall Targeted Proteomics Course at PRBB Barcelona (Sep 28-Oct 3, 2014) - watch presentations

Summer Panorama Webinar III, August 19, 2014 - watch the recording

Summer EU Proteomics Summer School Workshops in Brixen/Bressanone (August 3-9, 2014)

Summer Skyline User Group Meeting at ASMS 2014 - review the presentations

Summer ASMS 2-Day Courses in Baltimore, MD (June 14 & 15, 2014)

More Events

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Skyline User Group Meeting

Recently Published

Sharma, Journal of Proteome Research - Panorama: A Targeted Proteomics Knowledge Base

Broudy, Killeen, Bioinformatics - A framework for installable external tools in Skyline

Choi, Bioinformatics - MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

Egertson, Nature Methods - Multiplexed MS/MS for improved data-independent acquisition

Abbatiello, Mollecular Cellular Proteomics - Design, Implementation, and Multi-Site Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in LC-MRM-MS

More Publications


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Get Involved

Make a tax-deductible contribution to the Skyline project this year through the University of Washington Foundation

See what the community is saying about Skyline - and add your statement!

Other ways you can help


Skyline adoption and use information

Create a new project for your lab or group on PanoramaWeb hosted by the University of Washington

Skyline source code is available under Apache 2.0 License and part of the ProteoWizard project (mzML and mzXML conversion)

Spectral Library Links