Skyline Targeted Proteomics Environment 
Skyline User Group MeetingJoin over 230 others. Register for the Skyline User Group Meeting at ASMS
St. Louis, MO - Sunday, May 31st
Skyline WebinarsReview the latest Skyline Tutorial Webinar
iRT Retention Time Prediction with Skyline

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Register! Summer ASMS Short Course - Case Studies in Quantitative Proteome Bioinformatics [description] at ASMS 2015, St. Louis, MO (May 30 & 31, 2015)

Register! Summer Skyline User Group Meeting at ASMS 2015, St. Louis, MO (May 31, 2015)

Register! Fall EMBO Practical Course: Targeted Proteomics at PRBB, Barcelona (November 15-20, 2015)


Spring Computation and Statistics for Discovery and Targeted Proteomics at Northeastern, Boston (May 18-22, 2015)

Summer Targeted Proteomics Course at ETH, Zurich (June 22-26, 2015)


Spring Targeted Quantitative Proteomics Course at UW, Seattle (March 23-27, 2015)

Spring Short Course at US HUPO, Tempe (March 15, 2015) - review the slides

Winter Targeted Proteomics Workshop at IIT Bombay (Dec 10-11, 2014)

Winter Targeted Proteomics Workshop at Kyoto University (Nov 26, 2014)

Fall Proteomics Informatics Short Course in Seoul (October 13 & 14, 2014)

Fall Targeted Proteomics Course at PRBB Barcelona (Sep 28-Oct 3, 2014) - watch presentations

Summer Panorama Webinar III, August 19, 2014 - watch the recording

Summer EU Proteomics Summer School Workshops in Brixen/Bressanone (August 3-9, 2014)

Summer Skyline User Group Meeting at ASMS 2014 - review the presentations

Summer ASMS 2-Day Courses in Baltimore, MD (June 14 & 15, 2014)

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Skyline User Group Meeting

Recently Published

Egertson, Nature Protocols - Multiplexed peptide analysis using data-independent acquisition and Skyline

Abbatiello, Mollecular Cellular Proteomics - Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma

Sharma, Journal of Proteome Research - Panorama: A Targeted Proteomics Knowledge Base

Broudy, Killeen, Bioinformatics - A framework for installable external tools in Skyline

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Make a tax-deductible contribution to the Skyline project this year through the University of Washington Foundation

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Other ways you can help


Skyline adoption and use information

Create a new project for your lab or group on PanoramaWeb hosted by the University of Washington

Skyline source code is available under Apache 2.0 License and part of the ProteoWizard project (mzML and mzXML conversion)

Spectral Library Links